3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00471

Details:

PFam ID : PF00471

PFam Domain Description : Ribosomal protein L33

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 934

Average sequence length: 49.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00471	F0V2I9_9MOLU_3_52	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00471	RM33_ANOGA_15_59	99.7

Sequence based PCA Plot of the family - PF00471 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay