3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08167

Details:

PFam ID : PF08167

PFam Domain Description : rRNA processing/ribosome biogenesis

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 92

Average sequence length: 168.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08167	C1G254_PARBD_26_204	43.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08167	A9RGU0_PHYPA_41_229	100

Sequence based PCA Plot of the family - PF08167 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=116 Length=8
Motif4 Start=153 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay