3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12289

Details:

PFam ID : PF12289

PFam Domain Description : Rotavirus VP1 structural protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 7

Average sequence length: 43.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12289	A5EF42_BRASB_159_376	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12289	Q1L7K0_9REOV_828_878	100

Sequence based PCA Plot of the family - PF12289 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay