3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00453

Details:

PFam ID : PF00453

PFam Domain Description : Ribosomal protein L20

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 954

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00453	A7LM78_HYDVU_52_174	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00453	RK20_ASTLO_2_112	100

Sequence based PCA Plot of the family - PF00453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8
Motif3 Start=28 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay