3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00281

Details:

PFam ID : PF00281

PFam Domain Description : Ribosomal protein L5

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 1019

Average sequence length: 56.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00281	A4R4Q6_MAGO7_195_251	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00281	C1KRI1_MICSR_24_80	97.5

Sequence based PCA Plot of the family - PF00281 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=26
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay