3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08373

Details:

PFam ID : PF08373

PFam Domain Description : RAP domain

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 257

Average sequence length: 59.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08373	B9Q4T9_TOXGO_1087_1139	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08373	C1MME8_MICPC_931_1030	100

Sequence based PCA Plot of the family - PF08373 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=32 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay