3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04561

Details:

PFam ID : PF04561

PFam Domain Description : RNA polymerase Rpb2, domain 2

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 2483

Average sequence length: 136.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04561	B6AC47_CRYMR_324_418	67.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04561	B6AC47_CRYMR_324_418	98.0

Sequence based PCA Plot of the family - PF04561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=8
Motif2 Start=1 Length=8
Motif3 Start=170 Length=8
Motif4 Start=210 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay