3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11473

Details:

PFam ID : PF11473

PFam Domain Description : RNA binding protein B2

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 59.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11473	F0LRQ2_VIBFU_1_59	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11473	Q6XNL4_MRNV_13_88	100

Sequence based PCA Plot of the family - PF11473 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay