3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07890

Details:

PFam ID : PF07890

PFam Domain Description : Rrp15p

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 143

Average sequence length: 140.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07890	A0JLN3_HUMAN_91_128	52

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07890	A8BHG9_GIAIC_41_174	100

Sequence based PCA Plot of the family - PF07890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay