3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04758

Details:

PFam ID : PF04758

PFam Domain Description : Ribosomal protein S30

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 152

Average sequence length: 55.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04758	B0EFX7_ENTDI_1_148	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04758	B9SXX9_RICCO_3_42	96.6

Sequence based PCA Plot of the family - PF04758 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=34 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay