3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12172

Details:

PFam ID : PF12172

PFam Domain Description : Rubredoxin-like zinc ribbon domain (DUF35_N)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 621

Average sequence length: 36.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12172	C1C169_9MAXI_279_305	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12172	D2RZU9_HALTV_40_77	91.9

Sequence based PCA Plot of the family - PF12172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=29

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay