3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00652

Details:

PFam ID : PF00652

PFam Domain Description : Ricin-type beta-trefoil lectin domain

Number of Sequence in 50% Dataset : 627

Number of Sequence in Full Dataset : 1540

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00652	E9J3U9_SOLIN_1_51	99.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00652	E0X4J0_THUOR_3_115	98.9

Sequence based PCA Plot of the family - PF00652 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay