3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03259

Details:

PFam ID : PF03259

PFam Domain Description : Roadblock/LC7 domain

Number of Sequence in 50% Dataset : 178

Number of Sequence in Full Dataset : 787

Average sequence length: 89.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03259	B7AAE5_THEAQ_16_109	24.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03259	B3QWP9_CHLT3_5_92	95.2

Sequence based PCA Plot of the family - PF03259 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay