3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06542

Details:

PFam ID : PF06542

PFam Domain Description : Regulator protein PHA-1

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 87

Average sequence length: 335.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06542	E3MMJ2_CAERE_63_188	76.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06542	Q4TTB2_CAEEL_709_1044	98.8

Sequence based PCA Plot of the family - PF06542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=184 Length=8
Motif3 Start=1 Length=8
Motif4 Start=309 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay