3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08461

Details:

PFam ID : PF08461

PFam Domain Description : Ribonuclease R winged-helix domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 185

Average sequence length: 64.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08461	B1MEQ1_MYCA9_12_67	25.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08461	Q8TYG2_METKA_6_76	95.6

Sequence based PCA Plot of the family - PF08461 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay