3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03947

Details:

PFam ID : PF03947

PFam Domain Description : Ribosomal Proteins L2, C-terminal domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 1097

Average sequence length: 123.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03947	M3R_DICDI_84_295	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03947	F0JAU1_NEOCA_44_123	99.8

Sequence based PCA Plot of the family - PF03947 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=127 Length=8
Motif2 Start=1 Length=20
Motif3 Start=111 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay