3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03113

Details:

PFam ID : PF03113

PFam Domain Description : Respiratory synctial virus non-structural protein NS2

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 5

Average sequence length: 99.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03113	Q9YWM8_9MONO_1_124	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03113	Q9YWM8_9MONO_1_124	100

Sequence based PCA Plot of the family - PF03113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay