3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03432

Details:

PFam ID : PF03432

PFam Domain Description : Relaxase/Mobilisation nuclease domain

Number of Sequence in 50% Dataset : 321

Number of Sequence in Full Dataset : 1180

Average sequence length: 219.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03432	F1T6L7_9ACTN_1_90	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03432	C8Q1D8_9GAMM_42_192	99.3

Sequence based PCA Plot of the family - PF03432 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=152 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay