3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04093

Details:

PFam ID : PF04093

PFam Domain Description : rod shape-determining protein MreD

Number of Sequence in 50% Dataset : 267

Number of Sequence in Full Dataset : 673

Average sequence length: 154.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04093	F0JB51_NEOCA_36_229	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04093	Q9RH81_PSEFL_4_91	99.7

Sequence based PCA Plot of the family - PF04093 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=71 Length=8
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay