3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02486

Details:

PFam ID : PF02486

PFam Domain Description : Replication initiation factor

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 287

Average sequence length: 184.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02486	F0A0G1_NEIME_86_166	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02486	E3R7A8_9LACO_17_257	100

Sequence based PCA Plot of the family - PF02486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay