3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01020

Details:

PFam ID : PF01020

PFam Domain Description : Ribosomal L40e family

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 144

Average sequence length: 45.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01020	F0XDU6_9PEZI_42_642	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01020	A9LSF0_ARTAN_59_85	91.6

Sequence based PCA Plot of the family - PF01020 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay