3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03946

Details:

PFam ID : PF03946

PFam Domain Description : Ribosomal protein L11, N-terminal domain

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 729

Average sequence length: 58.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03946	M3R_DICDI_84_295	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03946	C6UMZ9_HODCD_9_68	95.1

Sequence based PCA Plot of the family - PF03946 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=8
Motif2 Start=13 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay