3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00866

Details:

PFam ID : PF00866

PFam Domain Description : Ring hydroxylating beta subunit

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 372

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00866	D7I1Z1_PSESS_15_94	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00866	B7S392_9GAMM_20_177	100

Sequence based PCA Plot of the family - PF00866 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=131 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay