3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08661

Details:

PFam ID : PF08661

PFam Domain Description : Replication factor A protein 3

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 151

Average sequence length: 105.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08661	Q757Z3_ASHGO_1_116	34.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08661	Q4DUA2_TRYCR_21_127	100

Sequence based PCA Plot of the family - PF08661 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay