3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01157

Details:

PFam ID : PF01157

PFam Domain Description : Ribosomal protein L21e

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 266

Average sequence length: 92.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01157	F1M4U3_RAT_1_20	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01157	Q9AW28_GUITH_2_99	98.4

Sequence based PCA Plot of the family - PF01157 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=17
Motif2 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay