3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06098

Details:

PFam ID : PF06098

PFam Domain Description : Radial spoke protein 3

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 79

Average sequence length: 252.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06098	B6KFB7_TOXGO_36_194	73.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06098	D7FP98_ECTSI_47_351	100

Sequence based PCA Plot of the family - PF06098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=122 Length=8
Motif3 Start=133 Length=8
Motif4 Start=235 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay