3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06459

Details:

PFam ID : PF06459

PFam Domain Description : Ryanodine Receptor TM 4-6

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 60

Average sequence length: 215.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06459	A8Q7A9_BRUMA_4521_4714	5.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06459	Q4RLR1_TETNG_1025_1291	98.3

Sequence based PCA Plot of the family - PF06459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=269 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay