3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02631

Details:

PFam ID : PF02631

PFam Domain Description : RecX family

Number of Sequence in 50% Dataset : 414

Number of Sequence in Full Dataset : 1166

Average sequence length: 120.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02631	Q21YA3_RHOFD_1_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02631	E6SK37_THEM7_72_261	100

Sequence based PCA Plot of the family - PF02631 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=47 Length=8
Motif3 Start=21 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay