3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10490

Details:

PFam ID : PF10490

PFam Domain Description : Rb-binding domain of kinetochore protein Cenp-F/LEK1

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 11

Average sequence length: 44.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10490	A2A280_HUMAN_1_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10490	Q4RKR8_TETNG_582_629	100

Sequence based PCA Plot of the family - PF10490 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay