3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04866

Details:

PFam ID : PF04866

PFam Domain Description : Rotavirus non-structural protein 6

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 11

Average sequence length: 82.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04866	A0MNG8_9CAUD_227_383	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04866	NSP6_ROTRA_1_75	100

Sequence based PCA Plot of the family - PF04866 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay