3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01250

Details:

PFam ID : PF01250

PFam Domain Description : Ribosomal protein S6

Number of Sequence in 50% Dataset : 144

Number of Sequence in Full Dataset : 1042

Average sequence length: 91.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01250	C1N4I8_MICPC_2_67	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01250	E1II13_9CHLR_6_111	100

Sequence based PCA Plot of the family - PF01250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=40 Length=20
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay