3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04085

Details:

PFam ID : PF04085

PFam Domain Description : rod shape-determining protein MreC

Number of Sequence in 50% Dataset : 213

Number of Sequence in Full Dataset : 956

Average sequence length: 150.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04085	D1R8R9_9CHLA_104_347	83.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04085	D1R8R9_9CHLA_104_347	100

Sequence based PCA Plot of the family - PF04085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=8
Motif3 Start=57 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay