3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04536

Details:

PFam ID : PF04536

PFam Domain Description : Repair protein

Number of Sequence in 50% Dataset : 258

Number of Sequence in Full Dataset : 1071

Average sequence length: 125.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04536	B6WAJ5_9FIRM_43_98	52.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04536	A6NPP1_9BACE_29_207	95.4

Sequence based PCA Plot of the family - PF04536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay