3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03837

Details:

PFam ID : PF03837

PFam Domain Description : RecT family

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 351

Average sequence length: 184.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03837	Q14NF2_SPICI_29_97	39.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03837	Q984J6_RHILO_9_233	99.1

Sequence based PCA Plot of the family - PF03837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay