3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01294

Details:

PFam ID : PF01294

PFam Domain Description : Ribosomal protein L13e

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 238

Average sequence length: 158.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01294	Q29193_PIG_1_51	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01294	D5LXL2_9CHON_1_93	99.5

Sequence based PCA Plot of the family - PF01294 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=27
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay