3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10150

Details:

PFam ID : PF10150

PFam Domain Description : Ribonuclease E/G family

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 1008

Average sequence length: 248.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10150	C6SMW3_NEIME_1_60	75.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10150	Q015E2_OSTTA_343_643	100

Sequence based PCA Plot of the family - PF10150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=95 Length=8
Motif2 Start=44 Length=8
Motif3 Start=17 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay