3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04471

Details:

PFam ID : PF04471

PFam Domain Description : Restriction endonuclease

Number of Sequence in 50% Dataset : 490

Number of Sequence in Full Dataset : 1198

Average sequence length: 112.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04471	D5VT68_METIM_41_156	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04471	D4RYS8_9FIRM_4_108	99.6

Sequence based PCA Plot of the family - PF04471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=52 Length=8
Motif3 Start=25 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay