3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00559

Details:

PFam ID : PF00559

PFam Domain Description : Retroviral Vif (Viral infectivity) protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 1422

Average sequence length: 185.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00559	Q1XE74_SIVCZ_1_206	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00559	Q1XE74_SIVCZ_1_206	100

Sequence based PCA Plot of the family - PF00559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=85 Length=14
Motif2 Start=134 Length=8
Motif3 Start=5 Length=17
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay