3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13456

Details:

PFam ID : PF13456

PFam Domain Description : Reverse transcriptase-like

Number of Sequence in 50% Dataset : 327

Number of Sequence in Full Dataset : 1408

Average sequence length: 78.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13456	C5Z733_SORBI_1_54	65.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13456	B7FVI2_PHATC_219_323	99.9

Sequence based PCA Plot of the family - PF13456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay