3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00468

Details:

PFam ID : PF00468

PFam Domain Description : Ribosomal protein L34

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 620

Average sequence length: 43.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00468	A4RU75_OSTLU_66_97	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00468	A5BZ88_VITVI_104_127	92.5

Sequence based PCA Plot of the family - PF00468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay