3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04728

Details:

PFam ID : PF04728

PFam Domain Description : Repeated sequence found in lipoprotein LPP

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 6

Average sequence length: 9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04728	C9SHY1_VERA1_182_309	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04728	C6C486_DICDC_24_34	100

Sequence based PCA Plot of the family - PF04728 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay