3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04566

Details:

PFam ID : PF04566

PFam Domain Description : RNA polymerase Rpb2, domain 4

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 715

Average sequence length: 62.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04566	B8P210_POSPM_194_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04566	D9ZB64_9ARCH_511_578	100

Sequence based PCA Plot of the family - PF04566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay