3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08737

Details:

PFam ID : PF08737

PFam Domain Description : Rgp1

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 177

Average sequence length: 251.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08737	A7SX95_NEMVE_164_328	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08737	A7SX95_NEMVE_164_328	100

Sequence based PCA Plot of the family - PF08737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=169 Length=8
Motif3 Start=244 Length=8
Motif4 Start=260 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay