3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00298

Details:

PFam ID : PF00298

PFam Domain Description : Ribosomal protein L11, RNA binding domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 1189

Average sequence length: 69.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00298	Q70AI2_WHEAT_1_98	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00298	Q2GD86_NEOSM_72_137	100

Sequence based PCA Plot of the family - PF00298 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=1 Length=18
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay