3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03342

Details:

PFam ID : PF03342

PFam Domain Description : Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 185.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03342	O11353_MCV1_8_45	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03342	Q68M48_9RHAB_1_227	100

Sequence based PCA Plot of the family - PF03342 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay