3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01907

Details:

PFam ID : PF01907

PFam Domain Description : Ribosomal protein L37e

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 186

Average sequence length: 52.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01907	C7Q7B9_CATAD_64_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01907	E9DT18_METAQ_2_28	100

Sequence based PCA Plot of the family - PF01907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=14 Length=8
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay