3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03398

Details:

PFam ID : PF03398

PFam Domain Description : Regulator of Vps4 activity in the MVB pathway

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 231

Average sequence length: 148.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03398	D8M6Q5_BLAHO_39_199	62

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03398	Q9LUQ1_ARATH_34_210	100

Sequence based PCA Plot of the family - PF03398 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=97 Length=8
Motif3 Start=25 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay