3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00301

Details:

PFam ID : PF00301

PFam Domain Description : Rubredoxin

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 926

Average sequence length: 45.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00301	A7I6M9_METB6_4_27	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00301	A7I6M9_METB6_4_27	98.2

Sequence based PCA Plot of the family - PF00301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=11
Motif2 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay