3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00981

Details:

PFam ID : PF00981

PFam Domain Description : Rotavirus RNA-binding Protein 53 (NS53)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 39

Average sequence length: 390.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00981	A4ZD80_9REOV_1_135	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00981	NSP1_ROTME_1_489	100

Sequence based PCA Plot of the family - PF00981 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=27
Motif2 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay