3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10390

Details:

PFam ID : PF10390

PFam Domain Description : RNA polymerase II elongation factor ELL

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 92

Average sequence length: 232.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10390	ELL1_SCHPO_4_278	63.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10390	E9C9F4_9EUKA_158_518	97.8

Sequence based PCA Plot of the family - PF10390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay